Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 40
Filter
1.
Transbound Emerg Dis ; 69(6): 3300-3316, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35964328

ABSTRACT

The number of parainfluenza virus 5 (PIV5) infection cases has increased worldwide over the past six decades; however, factors underlying this increase remain unclear. PIV5 has been emerging or re-emerging in humans and animal species. To date, no information is yet available regarding PIV5 infection in arthropod ticks. Here, we successfully isolated tick-derived PIV5 from the Ixodes persulcatus species designated as HLJ/Tick/2019 in Heilongjiang, China. Phylogenetic analysis revealed that the tick-derived PIV5 is closely related to subclade 2.2.6, which has become the dominant subtype prevalent in dogs, pigs and wildlife across China. Further experiments to understand the importance of this virus as an infectious vector revealed that a ferret animal model experimentally infected with Tick/HLJ/2019 via the oronasal and ocular inoculation routes developed moderate respiratory distress with pneumonia and neurologic tissue damage from inflammation for the first time. Further surveillance of PIV5 in vectors of viral transmission is necessary to enhance our knowledge of its ecology in reservoirs and facilitate the control of re-emerging diseases.


Subject(s)
Ixodes , Parainfluenza Virus 5 , Animals , Dogs , Humans , Ferrets , Ixodes/virology , Parainfluenza Virus 5/classification , Parainfluenza Virus 5/genetics , Parainfluenza Virus 5/isolation & purification , Phylogeny , Rubulavirus Infections/epidemiology , Rubulavirus Infections/pathology , Rubulavirus Infections/virology , Swine
2.
Gac Med Mex ; 156(4): 265-272, 2020.
Article in English | MEDLINE | ID: mdl-32831337

ABSTRACT

INTRODUCTION: Acute respiratory infections are the second cause of mortality in children younger than five years, with 150.7 million episodes per year. Human orthopneumovirus (hOPV) and metapneumovirus (hMPV) are the first and second causes of bronchiolitis; type 2 human orthorubulavirus (hORUV) has been associated with pneumonia in immunocompromised patients. OBJECTIVE: To define hOPV, hMPV and hORUV geographical distribution and circulation patterns. METHOD: An observational, prospective cross-sectional pilot study was carried out. Two-hundred viral strains obtained from pediatric patients were genotyped by endpoint reverse transcription polymerase chain reaction (RT-PCR). RESULTS: One-hundred and eighty-six positive samples were typed: 84 hOPV, 43 hMPV, two hORUV and 57 co-infection specimens. Geographical distribution was plotted. hMPV, hOPV, and hORUV cumulative incidences were 0.215, 0.42, and 0.01, respectively. Cumulative incidence of hMPV-hORUV and hMPV-hOPV coinfection was 0.015 and 0.23; for hOPV-hMPV-hORUV, 0.035; and for hORUV-hOPV, 0.005. The largest number of positive cases of circulating or co-circulating viruses occurred between January and March. CONCLUSIONS: This study successfully identified circulation and geographical distribution patterns of the different viruses, as well as of viral co-infections.


INTRODUCCIÓN: Las infecciones respiratorias agudas constituyen la segunda causa de mortalidad en los niños menores de cinco años, con 150.7 millones de episodios anuales. Entre los principales agentes etiológicos están Orthopneumovirus (hOPV) y metapneumovirus (hMPV) humanos como primera y segunda causa de bronquiolitis, respectivamente; Orthorubulavirus humano tipo 2 (hORUV) se ha asociado a neumonía en pacientes inmunocomprometidos. OBJETIVO: Definir patrones de distribución geográfica y de circulación de hOPV, hMPV y hORUV. MÉTODO: Se llevó a cabo un estudio piloto transversal prospectivo observacional. Se genotipificaron 200 aislamientos virales de pacientes pediátricos mediante transcripción inversa seguida de reacción en cadena de la polimerasa en punto final (RT-PCR). RESULTADOS: Se tipificaron 186 muestras positivas: 84 de hOPV, 43 de hMPV, dos de hORUV y 57 de coinfecciones. Se trazó la distribución geográfica. Las incidencias acumuladas de hMPV, hOPV y hORUV fueron de 0.215, 0.42 y 0.01, respectivamente. Las incidencias acumuladas de la coinfección de hMPV-hORUV y hMPV-hOPV fueron de 0.015 y 0.23; de hOPV-hMPV-hORUV, de 0.035; y de hORUV-hOPV, de 0.005. El mayor número de casos positivos de virus circulantes o cocirculantes se presentó entre enero y marzo. CONCLUSIONES: Fue posible identificar patrones de circulación y distribución geográfica de los diferentes virus, así como de las coinfecciones virales.


Subject(s)
Paramyxoviridae Infections/epidemiology , Pneumovirus Infections/epidemiology , Respiratory Tract Infections/epidemiology , Rubulavirus Infections/epidemiology , Adolescent , Child , Child, Preschool , Coinfection/epidemiology , Coinfection/virology , Cross-Sectional Studies , Genotype , Humans , Incidence , Infant , Infant, Newborn , Paramyxoviridae Infections/virology , Pilot Projects , Pneumovirus Infections/virology , Prospective Studies , Respiratory Tract Infections/virology , Reverse Transcriptase Polymerase Chain Reaction , Rubulavirus Infections/virology
3.
J Clin Virol ; 124: 104261, 2020 03.
Article in English | MEDLINE | ID: mdl-31954277

ABSTRACT

BACKGROUND: Human parainfluenza viruses (HPIVs) cause upper and lower respiratory tract illnesses, most frequently among infants and young children, but also in the elderly. While seasonal patterns of HPIV types 1-3 have been described, less is known about national patterns of HPIV-4 circulation. OBJECTIVES: To describe patterns of HPIVs circulation in the United States (US). STUDY DESIGN: We used data from the National Respiratory and Enteric Virus Surveillance System (NREVSS), a voluntary passive laboratory-based surveillance system, to characterize the epidemiology and circulation patterns of HPIVs in the US during 2011-2019. We summarized the number of weekly aggregated HPIV detections nationally and by US census region, and used a subset of data submitted to NREVSS from public health laboratories and several clinical laboratories during 2015-2019 to analyze differences in patient demographics. RESULTS: During July 2011 - June 2019, 2,700,135 HPIV tests were reported; 122,852 (5 %) were positive for any HPIV including 22,446 for HPIV-1 (18 %), 17,474 for HPIV-2 (14 %), 67,649 for HPIV-3 (55 %), and 15,283 for HPIV-4 (13 %). HPIV testing increased substantially each year. The majority of detections occurred in children aged ≤ 2 years (36 %) with fluctuations in the distribution of age by type. CONCLUSIONS: HPIVs were detected year-round during 2011-2019, with type-specific year-to-year variations in circulation patterns. Among HPIV detections where age was known, the majority were aged ≤ 2 years. HPIV-4 exhibited an annual fall-winter seasonality, both nationally and regionally. Continued surveillance is needed to better understand national patterns of HPIV circulation.


Subject(s)
Parainfluenza Virus 1, Human , Parainfluenza Virus 2, Human , Parainfluenza Virus 3, Human , Parainfluenza Virus 4, Human , Respirovirus Infections/epidemiology , Rubulavirus Infections/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Epidemiological Monitoring , Female , Humans , Infant , Male , Middle Aged , Prevalence , Respirovirus Infections/diagnosis , Respirovirus Infections/virology , Rubulavirus Infections/diagnosis , Rubulavirus Infections/virology , Seasons , United States/epidemiology , Young Adult
4.
J Wildl Dis ; 55(4): 947-950, 2019 10.
Article in English | MEDLINE | ID: mdl-30896364

ABSTRACT

We report here the complete genome sequence of the parainfluenza virus PIV5-GD18 strain, isolated from a wild Sunda pangolin (Manis javanica) in China in 2017. It was 15,246 nucleotides with four nucleotides substitutions, which resulted in four changes of amino acid that were found only in PIV5-GD18, which further broadens the PIV5 infection host spectrum and will aid in our understanding of the complete genome sequence of PIV5 in different hosts.


Subject(s)
Genome, Viral , Mammals/virology , Parainfluenza Virus 5/isolation & purification , Rubulavirus Infections/veterinary , Animals , Fatal Outcome , Parainfluenza Virus 5/genetics , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology
5.
Epidemiol Infect ; 146(11): 1372-1383, 2018 08.
Article in English | MEDLINE | ID: mdl-29909804

ABSTRACT

Previously we reported on the HPIV2 genotype distribution in Croatia 2011-2014. Here we expand this period up to 2017 and confirm that G1a genotype has replaced G3 genotype from the period 2011-2014. Our hypothesis was that the G1a-to-G3 genotype replacement is an antibody-driven event. A cross-neutralisation with anti-HPIV2 sera specific for either G1a or G3 genotype revealed the presence of genotype-specific antigenic determinants. By the profound, in silico analyses three potential B cell epitopic regions were identified in the hemagglutinin neuraminidase (regions 314-361 and 474-490) and fusion protein (region 440-484). The region identified in the fusion protein does not show any unique site between the G1a and G3 isolates, five differentially glycosylated sites in the G1a and G3 genotype isolates were identified in epitopic regions of hemagglutinin neuraminidase. All positively selected codons were found to be located either in the region 314-316 or in the region 474-490 what indicates a strong positive selection in this region and reveals that these regions are susceptible to evolutionary pressure possibly caused by antibodies what gives a strong verification to our hypothesis that neutralising antibodies are a key determinant in the inherently complex adaptive evolution of HPIV2 in the region.


Subject(s)
Antibodies, Neutralizing/physiology , Parainfluenza Virus 2, Human/genetics , Rubulavirus Infections/virology , Adolescent , Age Distribution , Animals , Antibodies, Viral/physiology , Child , Child, Preschool , Chlorocebus aethiops , Croatia/epidemiology , Epitopes, B-Lymphocyte/chemistry , Epitopes, B-Lymphocyte/immunology , Female , Genotype , Guinea Pigs , HN Protein/immunology , Humans , Infant , Likelihood Functions , Middle Aged , Parainfluenza Virus 2, Human/classification , Parainfluenza Virus 2, Human/immunology , Phylogeny , RNA, Viral/chemistry , RNA, Viral/genetics , Recurrence , Rubulavirus Infections/epidemiology , Rubulavirus Infections/immunology , Seasons , Sequence Alignment , Vero Cells
6.
Viral Immunol ; 31(5): 352-357, 2018 06.
Article in English | MEDLINE | ID: mdl-29672244

ABSTRACT

Human parainfluenza viruses (HPIVs) are among the major causes of respiratory infections in children, worldwide, including in Korea. There are four types of HPIVs, each with different epidemiological characteristics. HPIV3 is the most frequently circulating HPIV type, while the epidemiology of HPIV4 remains unclear. The aim of this study was to investigate the age-stratified seropositivity rates of HPIV types 1-4 among children in Korea. These data will be useful to determine vaccine requirements. This study included 245 participants categorized into four age groups: 6-11 months, 1 year, 2 years, and 3-5 years. Hemagglutination inhibition (HAI) assay was used to measure the antibody titers in the serum samples of the subjects. Overall, a significantly higher seropositivity rate (68%) was observed for HPIV3 (p < 0.001), indicating the predominant circulation of this type. In the 3- to 5-year-old group, 97% of the participants displayed seropositivity for HPIV3, suggesting that most Korean children acquire HPIV3 infection by the age of 5 years. The seropositivity rate for HPIV3 increased with age (p < 0.001); a prompt rise was observed between the 6-11 months age group and the 1-year age group. The seropositivity rates of HPIV1, HPIV2, and HPIV4 were found to increase with age (p < 0.001), with a marked increase recorded after the age of 2 years. HPIV1, HPIV2, and HPIV4 tended to infect children later than HPIV3. Older children showed high antibody titer ranges for HPIV3 (p < 0.001), suggesting that children experience multiple HPIV3 infections. An increasing trend of HPIV4 seropositivity rates with age was observed and this was comparable to theHPIV1 and HPIV2 seropositivity rates, indicating that its incidence may have been underestimated. To reduce HPIV infection, the administration of a HPIV3 vaccine to children 1 year of age is likely to be the most effective option.


Subject(s)
Antibodies, Viral/blood , Respiratory Tract Infections/epidemiology , Respirovirus Infections/epidemiology , Respirovirus/immunology , Rubulavirus Infections/epidemiology , Rubulavirus/immunology , Child, Preschool , Cross-Sectional Studies , Female , Hemagglutination Inhibition Tests , Humans , Infant , Male , Republic of Korea/epidemiology , Seroepidemiologic Studies
7.
J Vet Med Sci ; 80(4): 590-593, 2018 Apr 18.
Article in English | MEDLINE | ID: mdl-29459504

ABSTRACT

Recently, parainfluenza virus 5 (PIV5) infection has been increasingly reported in mammals. In this study, five PIV5 strains were isolated from diarrhea-affected piglets from four provinces or municipalities in China. An F-gene-based phylogenetic tree indicated that the five isolated strains were closely related to the PIV5 strain ZJQ-221 from a lesser panda in China, and the PIV5 strain 1168-1 from a dog in South Korea. The new isolates differed genetically from other pig, calf, rhesus macaque kidney cells, human, and dog PIV5 reference strains. Our study reveals the presence of PIV5 in intestinal tissue samples collected from diarrhea-affected piglets, and provides novel information regarding the epidemiology and tissue tropism of PIV5.


Subject(s)
Diarrhea/veterinary , Parainfluenza Virus 5/isolation & purification , Rubulavirus Infections/veterinary , Swine Diseases/virology , Animals , China/epidemiology , Diarrhea/epidemiology , Diarrhea/virology , Parainfluenza Virus 5/genetics , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology , Swine , Swine Diseases/epidemiology
8.
J Med Virol ; 88(12): 2085-2091, 2016 12.
Article in English | MEDLINE | ID: mdl-27197630

ABSTRACT

Human parainfluenza viruses (HPIVs) are an important cause of acute lower respiratory tract infections (ALRTIs). HPIV-4, a newly identified virus, has been associated with severe ALRTIs recently. A total of 771 nasopharyngeal aspirate samples were collected from hospitalized children between March 2010 and February 2011. HPIVs were detected by Nest-PCR, and other known respiratory viruses were detected by RT-PCR and PCR. All amplification products were sequenced. HPIVs were detected in 151 (19.58%) patients, of whom 28 (3.63%) were positive for HPIV-4, 12(1.55%) for HPIV-1, 4 (0.51%) for HPIV-2, and 107 (13.87%) for HPIV-3. Only three were found to be co-infected with different types of HPIVs. All HPIV-positive children were under 5 years of age, with the majority being less than 1 year. Only the detection rate of HPIV-3 had a significant statistical difference (χ2 = 29.648, P = 0.000) between ages. HPIV-3 and HPIV-4 were detected during the summer. Sixty (39.74%) were co-infected with other respiratory viruses, and human rhinovirus (HRV) was the most common co-infecting virus. The most frequent clinical diagnosis was bronchopneumonia, and all patients had cough; some patients who were infected with HPIV-3 and HPIV-4 had polypnea and cyanosis. No significant difference was found in clinical manifestations between those who were infected with HPIV-4 and HPIV-3. Two genotypes for HPIV-4 were prevalent, although HPIV-4a dominated. HPIV-4 is an important virus for children hospitalized with ALRTIs in China. HRV was the most common co-infecting virus. Two genotypes for HPIV-4 are prevalent, HPIV-4a dominated. J. Med. Virol. 88:2085-2091, 2016. © 2016 Wiley Periodicals, Inc.


Subject(s)
Parainfluenza Virus 1, Human/isolation & purification , Parainfluenza Virus 2, Human/isolation & purification , Parainfluenza Virus 3, Human/isolation & purification , Parainfluenza Virus 4, Human/isolation & purification , Respiratory Tract Infections/epidemiology , Respirovirus Infections/epidemiology , Rubulavirus Infections/epidemiology , Acute Disease/epidemiology , Adolescent , Child , Child, Preschool , China/epidemiology , Coinfection/virology , Female , Genotype , Hospitalization , Humans , Infant , Male , Pneumonia/epidemiology , Pneumonia/virology , Prevalence , Respiratory Tract Infections/virology , Respirovirus Infections/virology , Rubulavirus Infections/virology , Seasons
9.
J Med Virol ; 88(10): 1733-41, 2016 10.
Article in English | MEDLINE | ID: mdl-27004845

ABSTRACT

The dynamics and evolution of the human parainfluenza virus type 2 (HPIV2) in Croatia, and also globally, are largely unknown. Most HPIV2 infections are treated symptomatically outside the hospital setting. Thus, the diagnosis is missing making it difficult to follow the genetic variation and evolution of the HPIV2. This study explores hospitalized HPIV2 cases in Croatia during 4-year period (2011-2014). Most cases in this period were reported in October or November (68.75%) and most of patients were under 2 years of age (81.25%). For molecular analyses, we used the F and HN gene sequences and showed that although both regions are equally suitable for phylogenetic analyses it would be advantageous to use regions longer than 2 kb for HPIV2 analyses of isolates which are spatially and temporally closely related. We show here that the dominant cluster in this area was cluster G3 while only one strain isolated in this period was positioned in the distant cluster G1a. Further monitoring of the HPIV2 will determine whether cluster G3 will remain dominant or it will be overruled by cluster G1a. This will be important for the surveillance of virus circulation in population and significance of the viral infection. J. Med. Virol. 88:1733-1741, 2016. © 2016 Wiley Periodicals, Inc.


Subject(s)
Genetic Variation , Parainfluenza Virus 2, Human/genetics , Rubulavirus Infections/virology , Animals , Child , Child, Preschool , Chlorocebus aethiops , Croatia/epidemiology , Female , HN Protein/genetics , Hospitalization , Humans , Infant , Male , Parainfluenza Virus 2, Human/classification , Parainfluenza Virus 2, Human/isolation & purification , Phylogeny , Rubulavirus Infections/epidemiology , Vero Cells , Viral Fusion Proteins/genetics
10.
Virus Genes ; 52(1): 81-90, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26728078

ABSTRACT

Since the report of the initial outbreak of Porcine rubulavirus (PorPV) infection in pigs, only one full-length genome from 1984 (PorPV-LPMV/1984) has been characterised. To investigate the overall genetic variation, full-length gene nucleotide sequences of current PorPV isolates were obtained from different clinical cases of infected swine. Genome organisation and sequence analysis of the encoded proteins (NP, P, F, M, HN and L) revealed high sequence conservation of the NP protein and the expression of the P and V proteins in all PorPV isolates. The V protein of one isolate displayed a mutation that has been implicated to antagonise the antiviral immune responses of the host. The M protein indicated a variation in a short region that could affect the electrostatic charge and the interaction with the membrane. One PorPV isolate recovered from the lungs showed a mutation at the cleavage site (HRKKR) of the F protein that could represent an important factor to determine the tissue tropism and pathogenicity of this virus. The HN protein showed high sequence identity through the years (up to 2013). Additionally, a number of sequence motifs of very high amino acid conservation among the PorPV isolates important for polymerase activity of the L protein have been identified. In summary, genetic comparisons and phylogenetic analyses indicated that three different genetic variants of PorPV are currently spreading within the swine population, and a new generation of circulating virus with different characteristics has begun to emerge.


Subject(s)
Rubulavirus Infections/veterinary , Rubulavirus/genetics , Swine Diseases/virology , Animals , DNA, Complementary , Disease Outbreaks/veterinary , Genes, Viral , Genetic Variation , Mexico/epidemiology , Phylogeny , RNA, Viral , Rubulavirus/classification , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology , Sequence Analysis, RNA , Swine , Swine Diseases/epidemiology , Viral Proteins/genetics
11.
BMC Infect Dis ; 15: 95, 2015 Feb 25.
Article in English | MEDLINE | ID: mdl-25879805

ABSTRACT

BACKGROUND: Reducing acute respiratory infection burden in children in Africa remains a major priority and challenge. We analyzed data from population-based infectious disease surveillance for severe acute respiratory illness (SARI) among children <5 years of age in Kibera, a densely populated urban slum in Nairobi, Kenya. METHODS: Surveillance was conducted among a monthly mean of 5,874 (range = 5,778-6,411) children <5 years old in two contiguous villages in Kibera. Participants had free access to the study clinic and their health events and utilization were noted during biweekly home visits. Patients meeting criteria for SARI (WHO-defined severe or very severe pneumonia, or oxygen saturation <90%) from March 1, 2007-February 28, 2011 had blood cultures processed for bacteria, and naso- and oro- pharyngeal swabs collected for quantitative real-time reverse transcription polymerase chain reaction testing for influenza viruses, parainfluenza viruses (PIV), respiratory syncytial virus (RSV), adenovirus, and human metapneumovirus (hMPV). Swabs collected during January 1, 2009 - February 28, 2010 were also tested for rhinoviruses, enterovirus, parechovirus, Mycoplasma pneumoniae, and Legionella species. Swabs were collected for simultaneous testing from a selected group of control-children visiting the clinic without recent respiratory or diarrheal illnesses. RESULTS: SARI overall incidence was 12.4 cases/100 person-years of observation (PYO) and 30.4 cases/100 PYO in infants. When comparing detection frequency in swabs from 815 SARI cases and 115 healthy controls, only RSV and influenza A virus were significantly more frequently detected in cases, although similar trends neared statistical significance for PIV, adenovirus and hMPV. The incidence for RSV was 2.8 cases/100 PYO and for influenza A was 1.0 cases/100 PYO. When considering all PIV, the rate was 1.1 case/100 PYO and the rate per 100 PYO for SARI-associated disease was 1.5 for adenovirus and 0.9 for hMPV. RSV and influenza A and B viruses were estimated to account for 16.2% and 6.7% of SARI cases, respectively; when taken together, PIV, adenovirus, and hMPV may account for >20% additional cases. CONCLUSIONS: Influenza viruses and RSV (and possibly PIV, hMPV and adenoviruses) are important pathogens to consider when developing technologies and formulating strategies to treat and prevent SARI in children.


Subject(s)
Legionellosis/epidemiology , Pneumonia, Mycoplasma/epidemiology , Pneumonia, Viral/epidemiology , Population Density , Poverty Areas , Urban Population/statistics & numerical data , Acute Disease , Adenoviridae/genetics , Adenoviridae/isolation & purification , Adenoviridae Infections/epidemiology , Adenoviridae Infections/virology , Child, Preschool , Epidemiological Monitoring , Female , Humans , Incidence , Infant , Influenza A virus/genetics , Influenza A virus/isolation & purification , Influenza, Human/epidemiology , Influenza, Human/virology , Kenya/epidemiology , Legionella/isolation & purification , Legionellosis/microbiology , Male , Metapneumovirus/genetics , Metapneumovirus/isolation & purification , Mycoplasma pneumoniae/isolation & purification , Orthomyxoviridae/genetics , Orthomyxoviridae/isolation & purification , Parainfluenza Virus 1, Human/genetics , Parainfluenza Virus 1, Human/isolation & purification , Parainfluenza Virus 2, Human/genetics , Parainfluenza Virus 2, Human/isolation & purification , Paramyxoviridae Infections/epidemiology , Paramyxoviridae Infections/virology , Picornaviridae Infections/epidemiology , Picornaviridae Infections/virology , Pneumonia, Mycoplasma/microbiology , Pneumonia, Viral/virology , Real-Time Polymerase Chain Reaction , Respiratory Syncytial Virus Infections/epidemiology , Respiratory Syncytial Virus Infections/virology , Respiratory Syncytial Viruses/genetics , Respiratory Syncytial Viruses/isolation & purification , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/virology , Respirovirus Infections/epidemiology , Respirovirus Infections/virology , Rhinovirus/genetics , Rhinovirus/isolation & purification , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology
12.
J Med Virol ; 87(6): 917-24, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25784285

ABSTRACT

Acute respiratory infections are responsible for high morbi-mortality in Peruvian children. However, the etiological agents are poorly identified. This study, conducted during the pandemic outbreak of H1N1 influenza in 2009, aims to determine the main etiological agents responsible for acute respiratory infections in children from Lima, Peru. Nasopharyngeal swabs collected from 717 children with acute respiratory infections between January 2009 and December 2010 were analyzed by multiplex RT-PCR for 13 respiratory viruses: influenza A, B, and C virus; parainfluenza virus (PIV) 1, 2, 3, and 4; and human respiratory syncytial virus (RSV) A and B, among others. Samples were also tested with direct fluorescent-antibodies (DFA) for six respiratory viruses. RT-PCR and DFA detected respiratory viruses in 240 (33.5%) and 85 (11.9%) cases, respectively. The most common etiological agents were RSV-A (15.3%), followed by influenza A (4.6%), PIV-1 (3.6%), and PIV-2 (1.8%). The viruses identified by DFA corresponded to RSV (5.9%) and influenza A (1.8%). Therefore, respiratory syncytial viruses (RSV) were found to be the most common etiology of acute respiratory infections. The authors suggest that active surveillance be conducted to identify the causative agents and improve clinical management, especially in the context of possible circulation of pandemic viruses.


Subject(s)
Influenza A virus/isolation & purification , Parainfluenza Virus 1, Human/isolation & purification , Parainfluenza Virus 2, Human/isolation & purification , Respiratory Syncytial Virus, Human/isolation & purification , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/virology , Acute Disease , Child , Female , Fluorescent Antibody Technique, Direct , Humans , Incidence , Infant , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/epidemiology , Male , Multiplex Polymerase Chain Reaction , Nasopharynx/virology , Peru/epidemiology , Respiratory Syncytial Virus Infections/epidemiology , Respirovirus Infections/epidemiology , Rubulavirus Infections/epidemiology , Time Factors
13.
Lik Sprava ; (3-4): 71-6, 2015.
Article in Ukrainian | MEDLINE | ID: mdl-26827443

ABSTRACT

It was analyzed the incidences of laryngotracheitis (LT) in children aged 0 to 14 years in Vinnytsya between 1995 and 2008. It was studied seasonal and circadian rhythms of LT in children. The seasonal variations of LT are characterized by two-wave curve with peaks in October and March, and with a significant decrease in July and August. The incidences of LT in October and March exceed the incidences of LT in July and August in 2.6 times. Circadian variation of LT is characterized by peak at night. The incidences of LT at night exceed the incidences in the morning in 2.6 times. The total number of the incidences of LT in the evening and at night exceed the total number of the incidences of LT in the morning and in the afternoon in 1.7 times. The maximum of incidences of LT to minimum of incidences of LT per hour ratio is 5:1 in girls compared to 4:1 in boys.


Subject(s)
Circadian Rhythm , Laryngitis/epidemiology , Parainfluenza Virus 2, Human/physiology , Rubulavirus Infections/epidemiology , Tracheitis/epidemiology , Adolescent , Child , Child, Preschool , Female , Humans , Incidence , Infant , Infant, Newborn , Laryngitis/physiopathology , Laryngitis/virology , Male , Parainfluenza Virus 2, Human/pathogenicity , Photoperiod , Rubulavirus Infections/physiopathology , Rubulavirus Infections/virology , Seasons , Sex Factors , Tracheitis/physiopathology , Tracheitis/virology , Ukraine
15.
Virus Res ; 188: 155-61, 2014 Aug 08.
Article in English | MEDLINE | ID: mdl-24768705

ABSTRACT

The persistence of porcine rubulavirus (PorPV-LPMV) in five pigs that had survived an outbreak of a natural infection was determined. After the resolution of the outbreak, each animal was housed in an isolation pen together with one sentinel pig. Approximately every 2 months thereafter one group of animals was euthanized and tissue samples taken for virological and serological analysis. Infectious virus was not isolated from any samples; antibodies to PorPV-LPMV were detected in convalescent pigs by virus neutralisation test and blocking ELISA but not in sentinel pigs. PorPV-LPMV mRNA of the nucleoprotein (NP) and phosphoprotein (P) genes was detected by a nested polymerase chain reaction (nPCR) in samples of trigeminal and optic nerves, cervical spinal cord, tonsils, salivary gland, lung and pancreas from convalescent pigs. mRNA was also detected in the midbrain, corpus callosum, or olfactory bulb in four out of five pigs by nRT-PCR, this result was confirmed by the sequencing of a 260bp PCR product of P gene region. The highest average viral copies/µg of total RNA occurred in the olfactory bulb and pancreas tissues of convalescent pigs and midbrain, tonsil and pancreas of sentinel pigs housed with the convalescent pigs. Satellitosis and gliosis of the midbrain, olfactory bulb, corpus callosum, medulla oblongata or choroid plexus were microscopically observed in four convalescent pigs. The control pig remained negative in all tests. The results indicate that PorPV-LPMV mRNA persists and induces a durable humoral immune response in pigs that have recovered from a natural infection. After a possible reactivation of the virus, it was transmitted to sentinel pigs in contact with the convalescent pigs.


Subject(s)
Disease Outbreaks , Rubulavirus Infections/veterinary , Rubulavirus/isolation & purification , Swine Diseases/epidemiology , Swine Diseases/virology , Animal Structures/virology , Animals , Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Enzyme-Linked Immunosorbent Assay , Neutralization Tests , Polymerase Chain Reaction , RNA, Messenger/isolation & purification , RNA, Viral/isolation & purification , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology , Swine , Time Factors , Viral Proteins/genetics
16.
Zoonoses Public Health ; 61(2): 131-7, 2014 Mar.
Article in English | MEDLINE | ID: mdl-23734711

ABSTRACT

We conducted an immunological assay of blood samples taken from 85 swine-specialist veterinarians attending the Congress of the Mexican Association of Swine Specialist Veterinarians in Mexico in 2011. Serum samples were assayed for Porcine rubulavirus (PorPV), Encephalomyocarditis virus (EMCV) and Leptospira spp. antibodies. Using a hemagglutination inhibition test, we registered 2.3% and 27% seropositivity for PorPV and EMCV, respectively. Using viral neutralization tests, we registered 5.8% and 47% seropositivity for PorPV and EMCV, respectively. For Leptospira spp., we registered a seropositivity of 38.8%. The variables (sex, age, years of exposure, number of visited farms, biosecurity level and region) showed no significant effect (P > 0.05) on the seropositivity for EMCV, PorPV and Leptospira spp. except for number of visited farms on HI seropositivity for EMCV (P < 0.05; odds ratio: 1.38). The data obtained provide information on the epidemiology of emerging diseases with zoonotic potential in occupational risk groups.


Subject(s)
Cardiovirus Infections/epidemiology , Leptospirosis/epidemiology , Occupational Exposure , Rubulavirus Infections/epidemiology , Swine Diseases/epidemiology , Adolescent , Adult , Aged , Animals , Antibodies, Bacterial/blood , Antibodies, Viral/blood , Cardiovirus Infections/microbiology , Encephalomyocarditis virus/genetics , Encephalomyocarditis virus/immunology , Encephalomyocarditis virus/isolation & purification , Female , Humans , Leptospira/genetics , Leptospira/immunology , Leptospira/isolation & purification , Leptospirosis/microbiology , Male , Mexico/epidemiology , Middle Aged , Rubulavirus/genetics , Rubulavirus/immunology , Rubulavirus/isolation & purification , Rubulavirus Infections/microbiology , Seroepidemiologic Studies , Swine , Swine Diseases/microbiology , Veterinarians , Young Adult , Zoonoses
17.
J Infect Dis ; 209(5): 695-702, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24133181

ABSTRACT

BACKGROUND: Human parainfluenza viruses (HPIVs) are among the most common causes of respiratory tract infections in children. Little is known about the epidemiology and clinical presentation of HPIV type 4. METHODS: A retrospective chart review and comparison of patients positive for HPIV types 1-4 by multiplex polymerase chain reaction between 2009 and 2012 at Children's Hospital Colorado was performed. Patients who had only direct fluorescent antibody testing performed or concurrent viral infections were excluded. RESULTS: Of 11,533 samples, 752 (6.5%) were positive for HPIV. After exclusion criteria, 316 samples were included in the study. HPIV-4 had year-round prevalence with biennial peaks in odd-numbered years. HPIV-4 and HPIV-3 had similar clinical presentations. 50.8% and 51.5% of patients with HPIV-3-4 had hypoxia compared to 20.3% and 33.3% of patients with HPIV-1-2 (P < .01). HPIV-1 (23.6%) and HPIV-2 (24.2%) were more associated with stridor than HPIV-3 (6.6%) and HPIV-4 (0%) (P < .01). No patients with HPIV-4 had croup. Patients with HPIV-4 had similar lengths of stay and mortality as those with HPIV-1-3. CONCLUSIONS: This is the first large-scale analysis of HPIV-4 clinical and epidemiologic features. HPIV-4 was most similar to HPIV-3 in clinical presentation. HPIV-4 had year-round prevalence with peaks in the autumn of odd-numbered years. HPIV-4 is a common respiratory pathogen capable of causing significant morbidity in children.


Subject(s)
Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/virology , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology , Child, Preschool , Female , Humans , Male , Parainfluenza Virus 4, Human , Retrospective Studies
18.
Virus Res ; 178(2): 423-9, 2013 Dec 26.
Article in English | MEDLINE | ID: mdl-24050998

ABSTRACT

A novel porcine parainfluenza 5 (pPIV5), KNU-11, in the genus Rubulavirus of the subfamily Paramyxovirinae, was isolated from the lung of a piglet in Korea in 2011. To understand the importance of this virus as an infectious agent, in vitro and in vivo characteristics of KNU-11 virus was investigated. KNU-11 was remarkably cytopathogenic, showing distinct cell rounding and clumping evident in porcine alveolar macrophage (PAM), porcine kidney (PK-15), and swine testicle (ST) cells within 12h postinfection and capable of hemagglutinating guinea pig red blood cells. Interestingly, this cytopathology was found to be absent in cell lines from other mammalian species. To evaluate the in vitro immunity of the pPIV5 isolate, we sought to explore alteration of inflammatory cytokine and chemokine expression in PAM cells infected with KNU-11 by using quantitative real-time RT-PCR. Most cytokine and chemokine genes including type 1 interferons (IFN-α/ß) and IFN-related antiviral genes were found to be significantly elevated in KNU-11 virus-infected PAM cells. A serum neutralization test-based serosurvey demonstrated that neutralizing antibodies against KNU-11 are readily detected in domestic swine populations, suggesting high prevalence of pPIV5 in Korean pig farms. Animal studies showed that KNU-11 fails to establish an acute respiratory illness, indicating that pPIV5 is non- or very mildly pathogenic to pigs.


Subject(s)
Parainfluenza Virus 5/isolation & purification , Parainfluenza Virus 5/physiology , Rubulavirus Infections/veterinary , Swine Diseases/virology , Animals , Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Cell Line , Cytokines/biosynthesis , Cytokines/genetics , Cytopathogenic Effect, Viral , Gene Expression Profiling , Guinea Pigs , Hemagglutination , Lung/virology , Neutralization Tests , Parainfluenza Virus 5/genetics , Parainfluenza Virus 5/pathogenicity , Real-Time Polymerase Chain Reaction , Republic of Korea/epidemiology , Rubulavirus Infections/epidemiology , Rubulavirus Infections/virology , Seroepidemiologic Studies , Swine , Swine Diseases/epidemiology
20.
J Virol ; 87(3): 1348-58, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23152534

ABSTRACT

Bats carry a variety of paramyxoviruses that impact human and domestic animal health when spillover occurs. Recent studies have shown a great diversity of paramyxoviruses in an urban-roosting population of straw-colored fruit bats in Ghana. Here, we investigate this further through virus isolation and describe two novel rubulaviruses: Achimota virus 1 (AchPV1) and Achimota virus 2 (AchPV2). The viruses form a phylogenetic cluster with each other and other bat-derived rubulaviruses, such as Tuhoko viruses, Menangle virus, and Tioman virus. We developed AchPV1- and AchPV2-specific serological assays and found evidence of infection with both viruses in Eidolon helvum across sub-Saharan Africa and on islands in the Gulf of Guinea. Longitudinal sampling of E. helvum indicates virus persistence within fruit bat populations and suggests spread of AchPVs via horizontal transmission. We also detected possible serological evidence of human infection with AchPV2 in Ghana and Tanzania. It is likely that clinically significant zoonotic spillover of chiropteran paramyxoviruses could be missed throughout much of Africa where health surveillance and diagnostics are poor and comorbidities, such as infection with HIV or Plasmodium sp., are common.


Subject(s)
Chiroptera/virology , Rubulavirus Infections/veterinary , Rubulavirus Infections/virology , Rubulavirus/classification , Rubulavirus/isolation & purification , Zoonoses/epidemiology , Adolescent , Adult , Africa/epidemiology , Animals , Antibodies, Viral/blood , Child , Child, Preschool , Cluster Analysis , Female , Humans , Infant , Male , Molecular Sequence Data , Phylogeny , RNA, Viral/genetics , Rubulavirus/genetics , Rubulavirus/pathogenicity , Rubulavirus Infections/epidemiology , Sequence Analysis, DNA , Seroepidemiologic Studies
SELECTION OF CITATIONS
SEARCH DETAIL
...